Create a new seq_plot

Usage

seq_plot(
  layout = NULL,
  aesthetics = aes(),
  show_legend = TRUE,
  legend = NULL,
  windows = NULL,
  plot_margin = 0.02,
  highlight_margins = FALSE,
  ...
)

Arguments

layout: Either NULL (positional layout, default) or a multiline character string defining a patchwork layout. When a layout string is given, track positions are determined entirely by track_id matching — direction on seq_track() is ignored.
aesthetics: A SeqAes object from aes() for plot-wide aesthetics.
show_legend: Logical. Global legend switch — when FALSE no legend is drawn regardless of element or track settings. Default TRUE.
legend: Convenience alias: legend = FALSE is sugar for show_legend = FALSE. All other values are ignored.
windows: Optional plot-wide GRanges. Tracks that do not set their own windows (and genomic scales nested in them) inherit from this value.
plot_margin: Numeric. Outermost canvas margin in NPC units (default 0.02). Per-side overrides via aesthetics = aes(margins = list(top = …, …)) still win.
highlight_margins: Logical. When TRUE, overlay translucent coloured rects on every margin band — a development aid. Default FALSE.
...: Additional arguments reserved for future use.

Value

A SeqPlotR6 instance (S3 class "SeqPlot").

Examples

seq_plot()

seq_plot(layout = "AB\nCC")